Table 2 Used datasets
From: Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean
Dataset | Samples used for analysis | Stations | Depth range (m) | Water samples | Size Fraction (µm) | 16S | 18S | Reference | ENA accession number |
|---|---|---|---|---|---|---|---|---|---|
Malaspina | |||||||||
MalaSurf | 122 | 120 | 3 | 122 | 0.2-3 | 122 | 124 | PRJEB23913 [18S rRNA genes], PRJEB25224 [16S rRNA genes] | |
MalaVP | 83 | 13 | 3-4000 | 91 | 0.2-3 | 91 | 83 | 15 & This study | PRJEB23771 [18S rRNA genes], PRJEB45015 [16S rRNA genes] |
MalaDeep (Proka) | 13 | 30 | ~4000 | 60 | 0.2-0.8 | 41 | - | PRJEB45011 | |
MalaDeep (Euka) | 13 | 27 | 2400-4000 | 27 | 0.8-20 | - | 82 | This study | PRJEB45014 |
Hotmix | 179 | 29 | 3-4539 | 188 | 0.2-3 | 188 | 179 | 59 & This study | PRJEB44683 [18S rRNA genes], PRJEB44474 [16S rRNA genes] |
