Fig. 4: Mouse SINEB2 RNA interacts with human rRNA in cell. | Nature Communications

Fig. 4: Mouse SINEB2 RNA interacts with human rRNA in cell.

From: Decryption of sequence, structure, and functional features of SINE repeat elements in SINEUP non-coding RNA-mediated post-transcriptional gene regulation

Fig. 4

Antisense (AS) Uchl1 SINEB2 interacting regions (Int) in human a 18S rRNA (Int1) and b 28S rRNA (Int2 and 3) identified by PARIS2. Different interaction sites are color-coded, and rRNA-SINEB2 pairs are shown in the corresponding color. Possible base-pairing based on sequence complementarity of interacting regions is shown. c SINEB2 regions interacting with 18S and 28S rRNA regions marked in (a) and (b) on icSHAPE data-driven SINEB2 structure from whole-cell lysate. SINEUP motifs from M1 to M7 are indicated by dashed squares.

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