Fig. 5: Burkholderia/Paraburkholderia and Pseudomonas spp. Lifestyle Associated Genes (LAGs). | Nature Communications

Fig. 5: Burkholderia/Paraburkholderia and Pseudomonas spp. Lifestyle Associated Genes (LAGs).

From: bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria

Fig. 5

Stacked bar plots representing the function known (dark colored) and unknown (light colored) in a Burkholderia/Paraburkholderia spp. and b Pseudomonas spp. pan-genome, unique genes or genes only present in one genome, core genes or genes present in >90% of all genomes and LAGs. LAGs are defined as gene clusters that are present at least in 70% of the genomes belonging to a lifestyle/group and more than a 2 log2 fold change between the lifestyle/group mean and the remaining bacteria mean presence. Core genes are defined as gene clusters present in >90% of the genomes across the complete dataset. Unknown function gene clusters are defined as clusters containing genes without any COG annotation provided by the eggNOG-mapper tool.

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