Table 1 Kinetic properties of AKRtyl and its mutants to cofactor NADPH and substrate tylosin.a

From: A three-level regulatory mechanism of the aldo-keto reductase subfamily AKR12D

Ligands

Proteins

Km or K0.5 (μM)d

kcat (s−1)d

kcat/Km (s−1 μM−1)d

Ki (μM)d

Hill coeff ne

NADPHb

WT

2.98 ± 0.16

4.38 ± 0.09

1470.0 × 10–3

148.6 ± 8.9 (Inhibition)

-

W331A

11.03 ± 1.09

0.18 ± 0.01

16.3 × 10–3

1541.0 ± 699.1 (Loss inhibition)

-

W331Af

8.33 ± 0.60

0.16 ± 0.01

19.3 × 10–3

-

1.17 ± 0.08 (Slight pos. coop.)

Tylosinc

WT

214.51 ± 17.17

1.44 ± 0.05

6.71 × 10–3

-

1.76 ± 0.19 (Pos. coop.)

WTg

278.00 ± 12.32

4.65 ± 0.09

16.72 × 10–3

-

1.76 ± 0.11 (Pos. coop.)

E193A

501.70 ± 176.30

1.10 ± 0.15

2.20 × 10–3

-

0.99 ± 0.18 (Loss of coop.)

E193W

1147.98 ± 334.21

0.56 ± 0.07

0.49 × 10–3

-

1.05 ± 0.12 (Loss of coop.)

R195A

333.70 ± 32.77

1.28 ± 0.05

3.84 × 10–3

-

1.17 ± 0.09 (Reduced coop.)

R195W

690.83 ± 112.26

1.37 ± 0.10

1.98 × 10–3

-

1.08 ± 0.09 (Loss of coop.)

Q254W

329.70 ± 46.26

1.20 ± 0.65

3.63 × 10–3

 

1.12 ± 0.11 (Reduced coop.)

R257A

382.19 ± 57.17

1.39 ± 0.09

3.64 × 10–3

-

1.38 ± 0.20 (Reduced coop.)

R257W

372.01 ± 99.22

1.31 ± 0.13

3.52 × 10–3

-

0.95 ± 0.13 (Loss of coop.)

  1. All measurements were carried out in triplicate and are shown as mean ± SD (standard deviation, n = 3 independent experiments).
  2. aThis table lists kinetic data of the important mutants and the comprehensive mutants can be found in the Supplementary Table 2.
  3. bThe saturation concentration of tylosin in NADPH kinetic assays: 5 mM.
  4. cThe saturation concentration of NADPH in most tylosin kinetic assays: 200 μM.
  5. dThe Michaelis-Menten constant Km and K0.5 in the Hill equation, the catalytic rate constant kcat, the catalytic efficiency kcat/Km and the inhibition constant Ki.
  6. eThe Hill coefficient n of substrate binding as a measure of cooperativity (n > 1, positive cooperativity; n = 1, no cooperativity; n < 1, negative cooperativity).
  7. fKinetic data of the W331A mutant on NADPH are fitted with the Hill equation.
  8. gThe saturation concentration of NADPH in this tylosin kinetic assays: 25 μM.