Table 1 Genes within the 99th percentile of elevated FST and DXY genomic regions with a significant signature of selection according to the McDonald-Kreitman (MK) test
From: The global speciation continuum of the cyanobacterium Microcoleus
Gene ID (NCBI) | Gene abbreviations (prokka) | Gene name (prokka) | Localization (Number of genomes in which is present) | COG function | Neutrality Index (NI) |
|---|---|---|---|---|---|
945060 | dxs | 1-deoxy-D-xylulose-5-phosphate synthase | Core genome (201) | Coenzyme transport and metabolism, Lipid transport and metabolism (COG1154) | * |
945064 | hepT | Heptaprenyl diphosphate synthase component 2 | Core genome (201) | Isoprenoid biosynthesis; Coenzyme transport and metabolism (COG0142) | N < 1 |
33366736 | srrA | Transcriptional regulatory protein | Core genome (201) | DNA-binding response regulator, NarL/FixJ family (COG2197) | N < 1 |
946396 | cheR | Chemotaxis protein methyltransferase | Flexible genome (149) | Signal transduction mechanisms (COG1352) | * |
946607 | COQ3_4 | O-methyltransferase | Flexible genome (49) | Ubiquinone biosynthesis; Coenzyme transport and metabolism (COG2227) | N > 1 |
948080 | glyS | Glycine-tRNA ligase subunit β | Flexible genome (178) | Translation, ribosomal structure, and biogenesis (COG0751) | N < 1 |
945752 | hcnC | Hydrogen cyanide synthase | Flexible genome (142) | Aminoacid transport and metabolism (COG0665) | N > 1 |
57664949 | hemY | Protoporphyrinogen oxidase | Flexible genome (78) | Coenzyme transport and metabolism; Heme biosynthesis (COG1232) | N > 1 |
948805 | ISAcma16 | IS4 family transposase ISAcma16 | Flexible genome | Mobilome: prophages, transposons (COG3385) | N < 1 |
\ | ISWen2 | IS110 family transposase ISWen2 | Flexible genome | Mobilome: prophages, transposons (COG3547) | N < 1 |
946720 | menD | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase | Flexible genome (20) | Coenzyme transport and metabolism; Menaquinone biosynthesis (COG1165) | N < 1 |
945065 | panE | 2-dehydropantoate 2-reductase | Flexible genome (163) | Coenzyme transport and metabolism; Pantothenate and Coenzyme A synthesis (COG1893) | * |
946712 | pchA | Salicylate biosynthesis isochorismate synthase | Flexible genome (77) | Coenzyme transport and metabolism; Menaquinone biosynthesis (COG1169) | N > 1 |
\ | phrB | (6-4) Photolyase | Flexible genome (95) | Uncharacterized protein related to deoxyribodipyrimidine photolyase (COG3046) | N > 1 |
852135 | pknD_39 | Serine/threonine-protein kinase PknD | Flexible genome (16) | Signal transduction mechanisms (COG0515) | * |
946209 | ppsA_1 | Phosphoenolpyruvate synthase | Flexible genome (122) | Carbohydrate transport and metabolism; Gluconeogenesis (COG0574) | N > 1 |
946393 | rcp1_3 | Response regulator rcp1 | Flexible genome (146) | Signal transduction mechanisms; Chemotaxis (COG0784) | N < 1 |
946611 | rcsC_52 | Sensor histidine kinase RcsC | Flexible genome (37) | Signal transduction mechanisms (COG0642) | N > 1 |
946611 | rcsC_74 | Sensor histidine kinase RcsC | Flexible genome (35) | Signal transduction mechanisms (COG0642) | N < 1 |
946611 | rcsC_75 | Sensor histidine kinase RcsC | Flexible genome (132) | Signal transduction mechanisms (COG0642) | N < 1 |
946611 | rcsC_76 | Sensor histidine kinase RcsC | Flexible genome (50) | Signal transduction mechanisms (COG2202) | N < 1 |
946611 | rcsC_78 | Sensor histidine kinase RcsC | Flexible genome (12) | Signal transduction mechanisms (COG0642) | N > 1 |
946611 | rcsC_93 | Sensor histidine kinase RcsC | Flexible genome (33) | Signal transduction mechanisms (COG0642) | N < 1 |
946611 | sasA_33 | Histidine kinase | Flexible genome (50) | Signal transduction mechanisms (COG2202) | N > 1 |
946611 | sasA_43 | Adaptive-response sensory-kinase SasA | Flexible genome (77) | Signal transduction mechanisms (COG0517) | N < 1 |
947913 | sasA_44 | Adaptive-response sensory-kinase SasA | Flexible genome (142) | Signal transduction mechanisms (COG0745) | N < 1 |
— | trmR_2 | tRNA 5-hydroxyuridine methyltransferase | Flexible genome (182) | Translation, ribosomal structure, and biogenesis; tRNA modification (COG2520) | N > 1 |
944813 | murF | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Flexible genome (100) | Cell wall/membrane biogenesis; Mureine biosynthesis (COG0770) | * |
946915 | hypothetical | Putative oxidoreductase | Flexible genome | Energy production and conversion (COG0243) | N < 1 |
