Fig. 1: Summary of Pf parasite isolates and WGS data from SEA. | Nature Communications

Fig. 1: Summary of Pf parasite isolates and WGS data from SEA.

From: Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum

Fig. 1

a Distribution of sampling location and collection year for the 2055 analyzable samples. The text and color in each block indicate the number of isolates sampled at a given year from a given location (also see colorbar). b Distribution of genome fractions covered by at least 5, 10, and 25 sequence reads of all analyzable parasite genomes from SEA. c Distribution of Fws in sequenced isolates that passed genotype missingness filtering. Note that to obtain a more accurate distribution of Fws, polyclonal isolates without a predominant clone were included in this analysis. d Distribution of ratios of predominant haploid genomes (clones) in analyzable SEA isolates. The predominant clone of a polyclonal infection was determined by dEploid90,92. Source data are provided as a Source data file.

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