Fig. 5: NOS/SONOS crosslinking observed upon co-crystallization with sulfonated calpeptin in the orthorhombic space group. | Nature Communications

Fig. 5: NOS/SONOS crosslinking observed upon co-crystallization with sulfonated calpeptin in the orthorhombic space group.

From: SARS-CoV-2 Mpro responds to oxidation by forming disulfide and NOS/SONOS bonds

Fig. 5

Oxidative NOS and SONOS bridges are seen at four sites in the A two dimeric protomers that form both the asymmetric and biological unit (all panels, purple: oxidized NOS/SONOS structure in P212121, PDB ID: 7Z3U, published in citation 21; yellow: reduced reference in P212121 PDB ID: 7Z2K). B Protomer A exhibits a SONOS linkage between C22, K61, and C44 that distorts the structure from the reduced form. In contrast, C protomer B shows only a NOS linkage between C22 and K61 at this site, with the overall structure differing little from the reduced reference. D The electron density on protomer A between K102 and C156 is ambiguous, consistent with but not conclusively showing a NOS linkage at partial occupancy. In contrast, E the density at the same site on protomer B clearly shows a NOS bond at partial occupancy. F None of the residues participating in these linkages are strongly conserved besides C44. Densities shown as blue volumes are the 2mFo-DFc map at 1 RMSD. The same 2mFo-DFc map at 0.5 RMSD is overlaid as a light mesh for the K102-C156 NOS figures, to show partial occupancies more clearly.

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