Table 1 Clinical characteristics and sequencing timelines for pediatric cohort

From: Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers

Participant characteristics

N (#)

Range or proportion (%)

Age (years)

   Median age at diagnosis

8.8

0.3–20.7 years

   Median age at enrollment

13.8

0.5–21.2 years

Sex

   Male

46

58.2

   Female

33

41.8

Priority for biopsy per patient (n = 79 patients)

   POG

20

25.3

   Clinical

56

70.1

   Both

2

2.6

   Not applicable

1

1.3

Tumor type (n = 83 samplesa)

   RMS/STS

13

15.7

   Bone sarcoma

12

14.5

   Neuroblastoma

9

10.8

   High grade CNS

16

19.3

   Low grade CNS

4

4.8

   Benign

8

9.6

   Leukemia

4

4.8

   Lymphoma

2

2.4

   Other solid

15

18.1

Tumor category (n = 83 samplesa)

   Solid

49

59.0

   CNS

19

22.9

   Heme

6

7.2

   Benign

9

10.8

Tumor sample sequencing time point (n = 83 samplesa)

   At initial diagnosis

27

32.5

   At progression/relapse

56

67.5

Turnaround time to MTB meeting (days) (n = 83 samples)

   30–60

20

24.1

   61–90

43

51.8

   91–120

12

14.5

   120+b

2

2.4

   No MTBc

6

7.2

   Median MTB turnaround time (days)

71

 

Turnaround time to TGR results (days) (n = 83 samples)

   0–30

27

32.5

   31–60

43

51.8

   61–90

3

3.6

   91–120

1

1.2

   No TGR

9

10.8

   Median TGR turnaround time (days)

34

 
  1. RMS/STS rhabdomyosarcoma/soft-tissue sarcoma, CNS central nervous system, TGR Targeted Gene Report, MTB Molecular Tumor Board.
  2. aOne patient had two tumors biopsied from different regions of the body; three patients had two samples sequenced at different times.
  3. bOne case was de-prioritized following the patient’s death.
  4. cFour patients died in <3 weeks from the time of sample receipt and a formal MTB was not scheduled.