Fig. 5: Profile of the phylogeny, taxonomy, metabolic pathways, and genome size of metagenome-assembled genomes (MAGs). | Nature Communications

Fig. 5: Profile of the phylogeny, taxonomy, metabolic pathways, and genome size of metagenome-assembled genomes (MAGs).

From: Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau

Fig. 5

a Maximum-likelihood phylogenetic tree of the 274 MAGs from GTDB, and the completeness and contamination of MAGs. b The number of genomes per metabolic pathway. c Principal coordinate analysis (PCoA) showing the difference of the relative abundance and composition of MAGs among three soil layers based on Bray-Curtis dissimilarity index (n = 22). The significant difference of the MAGs among three soil layers is tested by the permutational multivariate analysis of variance. d Comparison of estimated genome size of all MAGs found in the surface (SUR: n = 34), subsurface (SUB: n = 94), and permafrost (PL: n = 146) layers. P values were estimated using two-sided Wilcoxon test. Different lowercase letters in box plot denote significant differences for the genome size with soil depth (P < 0.05). Central line and whiskers in each box represent the median and 1.5 times the interquartile range, respectively. Boxes indicate the interquartile range between 25th and 75th percentile. Single points are outliers. Source data are provided as a Source Data file.

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