Table 1 Comparison of different methods on the CAFA3 dataset
From: Accurate prediction of protein function using statistics-informed graph networks
Method | Fmax | AUPR | ||||
|---|---|---|---|---|---|---|
BP | CC | MF | BP | CC | MF | |
BLAST | 0.264 | 0.390 | 0.394 | 0.087 | 0.205 | 0.228 |
FunFams | 0.372 | 0.272 | 0.440 | 0.162 | 0.115 | 0.316 |
DeepGO | 0.313 | 0.467 | 0.230 | 0.165 | 0.437 | 0.180 |
ATGO+ | 0.458 | 0.493 | 0.470 | 0.378 | 0.361 | 0.323 |
SPROF-GO | 0.480 | 0.358 | 0.522 | 0.397 | 0.225 | 0.421 |
PhiGnet | 0.531 | 0.584 | 0.606 | 0.425 | 0.590 | 0.571 |
