Fig. 2: Population-level trends in the epidemiological and sequencing data.
From: High-resolution epidemiological landscape from ~290,000 SARS-CoV-2 genomes from Denmark
a Number of sequences collected each day by date of testing, separated by lineage, together with the number of confirmed cases published each day by Statens Serum Institut (SSI). b Proportion of sequences collected each day belonging to each major variant. c Infection Ascertainment Rate (IAR) obtained via back-calculation from hospitalisation and mortality data and the proportion of PCR-positive tests taken each day for which we have a WGS. Error bands denote 95% confidence interval. d Proportion of the Danish population that have received a first and second vaccine dose over time. e Nucleotide Diversity calculated for all sequences for each day. f Daily relative growth rate calculated for each major lineage. Error bands denote 98% confidence interval.
