Fig. 6: Processing the PDB. | Nature Communications

Fig. 6: Processing the PDB.

From: Structure prediction of alternative protein conformations

Fig. 6

All single-chain structures with at least 50 residues and 20% regular amino acids determined by cryo-EM or X-ray crystallography with a resolution ≤5 Å were selected. These were then clustered at 30% sequence identity and 0.8 TM-score. Within the structural clusters, sequences with 90% sequence identity in different structural clusters were analysed manually to annotate alternative conformations. In total, 245 such sequences were found.

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