Fig. 4: Visualization analysis of scCAD’s results in mouse brain. | Nature Communications

Fig. 4: Visualization analysis of scCAD’s results in mouse brain.

From: scCAD: Cluster decomposition-based anomaly detection for rare cell identification in single-cell expression data

Fig. 4

a The t-SNE-based 2D embedding of the cells with color-coded identities. b The t-SNE-based 2D embedding of the cells. The cells in rare cell subtypes are color-coded to indicate their identities. c The seven rare cell clusters identified by scCAD are visually distinguished using different colors. d Violin plots showing the expression distribution of the most differentially expressed genes in each identified cell cluster. Additionally, 36 annotated cell types reported by Campbell et al. are used for comparison. Genes within the same cell cluster are indicated with the same color. Cell clusters that have been identified, along with their corresponding cell subtypes, are marked with an asterisk of the same color. Source data are provided as a Source Data file.

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