Table 1 Comparison of lattice constants determined by prediction and experimentally

From: SymProFold: Structural prediction of symmetrical biological assemblies

Organism

Accession No

Amino acids

Sym.

Unit cell prediction [nm]

Unit cell experimental [nm]

Experimental Data

Bacillus anthracis

P94217

862

p1

a: 7.3

b: 8.9

γ: 105°

a: 6.9

b: 8.3

γ: 106°68

Neg. stain projection map

Desulfurococcus mucosus

E8R795

904

p4

17.5

18.069

Neg. stain tilt series

Aeromonas salmonicida

P35823

502

p4

12.5

12.170

12.571

Neg. stain tilt series

Sporosarcina ureae

Q0VJW4

1097

p4

14.0

12.972

Neg. stain tilt series

Aneurinibacillus thermoaerophilus

Q6TL21

738

p4

10.6

1073

Freeze etch

Corynebacterium glutamicum

Q2VRQ3

491

p6

17.1

16.074

AFM

Methanococcus vannielii

A6URZ5

567

p6

10.8

12.075

Crystal structure

M. acetivorans SLP

Brevibacillus brevis

P06546

1053

p6

17.0

17.876

Neg. stain projection map

Thermoanaerobacter kivui

P22258

762

p6

18.1

1977

Neg. stain tilt series

Viridibacillus arvi

A0A0K2Z0V7

1016

p4

13.2

13.372

AFM, crystal structure presented in this study*

Methanococcus voltae

Q50833

576

p6

10.1

 

crystal structure presented in this study**

Bacillus licheniformis

P49052

874

p1

a: 7.5

b: 9.3

γ: 82°

 

No experimental data

Vibrio aerogenes

A0A1M5ZCF8

646

p4

12.7

 

No experimental data

Vibrio quintilis

A0A1M7YYM3

642

p4

12.2

 

No experimental data

Paenibacillus naphtalenovorans

A0A0U2M877

1053

p4

12.4

 

No experimental data

Pyrococcus abyssi

Q9V0N3

604

p6

18.2

 

No experimental data

Thermococcus camini

A0A7G2D8K1

489

p6

14.4

 

No experimental data

Thermococcus thioreducens

A0A0Q2M111

607

p6

18.5

 

No experimental data

Phocaeicola vulgatus

A0A5P3AY64

1100

p6

25.9

 

No experimental data

  1. *PDB 9FS9;
  2. **PDB 9FSA