Table 1 Comparison of lattice constants determined by prediction and experimentally
From: SymProFold: Structural prediction of symmetrical biological assemblies
Organism | Accession No | Amino acids | Sym. | Unit cell prediction [nm] | Unit cell experimental [nm] | Experimental Data |
---|---|---|---|---|---|---|
Bacillus anthracis | P94217 | 862 | p1 | a: 7.3 b: 8.9 γ: 105° | a: 6.9 b: 8.3 γ: 106°68 | Neg. stain projection map |
Desulfurococcus mucosus | E8R795 | 904 | p4 | 17.5 | 18.069 | Neg. stain tilt series |
Aeromonas salmonicida | P35823 | 502 | p4 | 12.5 | 12.170 12.571 | Neg. stain tilt series |
Sporosarcina ureae | Q0VJW4 | 1097 | p4 | 14.0 | 12.972 | Neg. stain tilt series |
Aneurinibacillus thermoaerophilus | Q6TL21 | 738 | p4 | 10.6 | 1073 | Freeze etch |
Corynebacterium glutamicum | Q2VRQ3 | 491 | p6 | 17.1 | 16.074 | AFM |
Methanococcus vannielii | A6URZ5 | 567 | p6 | 10.8 | 12.075 | Crystal structure M. acetivorans SLP |
Brevibacillus brevis | P06546 | 1053 | p6 | 17.0 | 17.876 | Neg. stain projection map |
Thermoanaerobacter kivui | P22258 | 762 | p6 | 18.1 | 1977 | Neg. stain tilt series |
Viridibacillus arvi | A0A0K2Z0V7 | 1016 | p4 | 13.2 | 13.372 | AFM, crystal structure presented in this study* |
Methanococcus voltae | Q50833 | 576 | p6 | 10.1 | crystal structure presented in this study** | |
Bacillus licheniformis | P49052 | 874 | p1 | a: 7.5 b: 9.3 γ: 82° | No experimental data | |
Vibrio aerogenes | A0A1M5ZCF8 | 646 | p4 | 12.7 | No experimental data | |
Vibrio quintilis | A0A1M7YYM3 | 642 | p4 | 12.2 | No experimental data | |
Paenibacillus naphtalenovorans | A0A0U2M877 | 1053 | p4 | 12.4 | No experimental data | |
Pyrococcus abyssi | Q9V0N3 | 604 | p6 | 18.2 | No experimental data | |
Thermococcus camini | A0A7G2D8K1 | 489 | p6 | 14.4 | No experimental data | |
Thermococcus thioreducens | A0A0Q2M111 | 607 | p6 | 18.5 | No experimental data | |
Phocaeicola vulgatus | A0A5P3AY64 | 1100 | p6 | 25.9 | No experimental data |