Table 1 Summary statistics for the genome assemblies and annotations of the four Schmidtea species
Species | S. mediterranea | S. polychroa | S. nova | S. lugubris | |
|---|---|---|---|---|---|
Assembly | schMedS3h1 | schMedS3h2 | schPol2 | schNov1 | schLug1 |
Genome assembly statistics | |||||
# contigs | 662 | 432 | 1013 | 283 | 320 |
Total length (bp) | 840,173,815 | 819,865,861 | 781,290,622 | 1,251,382,582 | 1,499,048,548 |
GC (%) | 29.59 | 29.59 | 28.11 | 28.13 | 27.87 |
N50 (bp) | 270,168,396 | 268,961,546 | 189,691,935 | 455,729,997 | 498,167,912 |
chromosome scaf. (%) | 95 | 96 | 89 | 98 | 99 |
unplaced (Mb) | 42 | 32.8 | 85.9 | 25 | 15 |
Gene annotation statistics | |||||
Number of genes | 58,735 | 58,551 | 41,915 | 41,539 | 48,029 |
Median gene length (bp) | 1113 | 1104 | 1137 | 1005 | 1039 |
Shortest gene (bp) | 83 | 83 | 68 | 85 | 81 |
Longest gene (bp) | 379,876 | 379,876 | 399,802 | 422,721 | 513,405 |
Total gene length (bp) | 395,812,229 | 391,333,147 | 360,601,815 | 508,048,891 | 610,689,353 |
Number of transcripts | 86,102 | 85,741 | 60,887 | 57,075 | 66,510 |
Median transcript length (bp) | 936 | 930 | 950 | 842 | 860 |
Shortest transcript (bp) | 83 | 83 | 68 | 85 | 61 |
Longest transcript (bp) | 76,733 | 94,201 | 32,100 | 36,224 | 28,220 |
Total transcript length (bp) | 111,559,651 | 110,732,822 | 79,151,531 | 68,678,530 | 79,879,797 |
