Table 1 Summary of identified promoter regions and their overlap with open chromatin regions and histone marks indicating promoter regions and active transcription in CanFam4
From: The DoGA consortium expression atlas of promoters and genes in 100 canine tissues
promoter set | all promoters | primary | alternative | novel |
|---|---|---|---|---|
robust | 46,644 | 15,654 | 16,596 | 14,394 |
comprehensive | 106,681 | 24,4978 | 40,282 | 41,421 |
epigenetic marks | all robust promoters | primary | alternative | novel |
ATAC-seq | 55.2% | 75.0% | 47.9% | 42.3% |
H3K27ac | 54.9% | 71.7% | 53.1% | 12.9% |
H3K4me3 | 35.3% | 59.2% | 29.5% | 5.4% |
