Fig. 1: Workflow of HyLight.
From: HyLight: Strain aware assembly of low coverage metagenomes
The input data consists of two fastq files, long reads and short reads. The output is a fasta file containing the assembled contigs. The overall procedure can be divided into three primary steps. Firstly, strain-resolved OG is conducted to assemble long reads. Subsequently, another OG is established to assemble short reads. Lastly, a contig OG is established to extend the contigs obtained from the assembly results of long and short reads, culminating in the generation of the final master contigs.
