Table 3 Segmentation landmarks

hypothalamic prosomere 1 (hp2)

mammillary area (Mam)^a

supraoptic commissure (soc)^b

preoptic area (PO)^b

anterior commissure (ac)^b

hypothalamic prosomere 1 (hp1)

retromammillary area (RMa)^a

subthalamic nucleus (STh)^a,

fornix tract (fx)

prosomere 3 (p3)

rostral ventral tegmental area (p3VTA)^c

rostral substantia nigra (p3SNR, p3SNC)^a

prosomere 2 (p2)

retroflex tract (rf)

habenula (Hb)^b

thalamus (p2A)^b

habenular commissure (hbc)^d

pineal gland and stalk (Pi)^d

prosomere 1 (p1)

posterior commissure (pc)^b

mesomere 1 (m1)

ventral tegmental decussation (vtg)^a

dorsal tegmental decussation (dtg)^a

oculomotor nucleus (3 M)^a

inferior colliculus (IC)^b

superior colliculus (SC)^b

mesomere 2 (m2)

Rostral-most r0 to caudal-most m1 landmarks

rhombomere 0 (r0)

prodromal interpeduncular nucleus (MnIPPr^c, IPPr^a)

caudal ventral tegmental area (r0VTA)^c

caudal substantia nigra (r0SNC, r0SNR)^a

decussation of superior cerebellar peduncle (dscp)^a

trochlear nucleus (4 M)^a

cerebellar vermis (CbV)^b

rhombomere 1 (r1)

interpeduncular nucleus (IPR, IPC)^a

dorsal tegmental nucleus (DTg)^a

cerebellar hemisphere (CbH)^b

rhombomere 2 (r2)

rostral end of trigeminal motor nucleus (r2-5M)^b

rhombomere 3 (r3)

rostral pontine nucleus (r3LPn, r3MPN)^a

caudal end of trigeminal motor nucleus (r3-5M)^b

rhombomere 4 (r4)

caudal pontine nucleus (r4LPn, r4MPN)^a

efferent facial nerve (7ne)

rhombomere 5 (r5)

trapezoid body (tz)^a

superior olive (MSO, LSO)^a

abducens motor nucleus (6 M)^a

genu of facial nerve (7 ng)

rhombomere 6 (r6)

ascending facial nerve (7na)

facial motor nucleus (7 M)^b

rhombomere 7 (r7)

Rostral-most r8 to caudal-most r6 landmarks

rhombomere 8 (r8)

rostral inferior olive (r8-IO)^a

rhombomere 9 (r9)

middle inferior olive (r9-IO)^a

rhombomere 10 (r10)

middle inferior olive (r10-IO)^a

middle hypoglossal motor nucleus (r10-12M)^a

rhombomere 11 (r11)

caudal inferior olive (r11-IO)^a