Fig. 1: ANI clustering showing genomovar and phylogroup structure for the Sal. ruber and E. coli genomes used in this study. | Nature Communications

Fig. 1: ANI clustering showing genomovar and phylogroup structure for the Sal. ruber and E. coli genomes used in this study.

From: Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination

Fig. 1

All vs. all ANI values were computed for Sal. ruber (A) and E. coli and relatives (E. fergusonii/Escherichia clades I–III) (B) using FastANI with default settings. Hierarchical clustering was performed with average linkage using Euclidean distances. Phylogroups were determined from a concatenated core gene tree for each species and with ClermonTyping (see figure key for details). Genomovar assignments were called based on ANI values (see figure key).

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