Table 1 Informatics software and tools in lipidomics

From: MS-DIAL 5 multimodal mass spectrometry data mining unveils lipidome complexities

Software name

MS-DIAL 5

MS-DIAL 4

Lipostar 2.0

LDA2

LipidFinder 2.0

XCMS online

mzmine

LipidHunter2

DI-MS (Full MS)

     

 

DI-MS (DDA)

     

DI-MS (DIA)

     

 

IM-MS (Full MS)

     

 

IM-MS (DDA)

     

 

IM-MS (DIA)

     

 

LC-MS (Full MS)

 

LC-MS (DDA)

  

LC-MS (DIA)

   

 

LC-IM-MS (Full MS)

   

 

LC-IM-MS (PASEF)

   

 

LC-IM-MS (diaPASEF)

       

In-depth lipid annotation using EAD

       

MSI

     

 
  1. The summary was created based on the publication of Ni, Z. et al. 9 Nat Methods 20, 193–204 (2023) with the actual website’s information on December 11, 2023. DI: direct or flow injection (for shotgun lipidomics), IM ion mobility (IM), IM-MS direct or flow injection with IM separation, LC liquid chromatography, DDA data dependent acquisition, DIA data independent acquisition, MSI mass spectrometry imaging.