Fig. 2: Genomic overview of the collection.
From: Parameters for one health genomic surveillance of Escherichia coli from Australia
A Phylogenetic tree (cgMLST-derived; see “methods”) visualizing the relatedness of the isolates under investigation. Coloured bars indicate (from innermost to outermost) i) the Australian State from which a genome originates; ii) Phylogroup association; iii) Source Niche; iv) Source Type and v) Sample type (whether Extraintestinal, Intestinal, Other or Unknown). Tree is midpoint rooted. Metadata is shown on this tree only to demonstrate its broad associations with phylogenetic structure; data on individual genomes is available in Supplementary Data 1. B Intersection of phylogroup and isolate source. C Source Niche of the top ten sequence types. See legend to the right of panel A for phylogroup and Source Niche colours associated with panels (B and C). Note that for panel B, cryptic E. coli phylogroups are omitted.
