Fig. 2: Large regions excluded from the benchmark.
From: Small variant benchmark from a complete assembly of X and Y chromosomes
We exclude regions if they do not have the expected 1:1 alignment of the assembly to the reference, such as large gaps in GRCh38 and regions with very large structural variation in HG002 relative to GRCh38 (Complement of dip.bed). We also exclude large tandem repeats and segmental duplications if they contain a break in the assembly to reference alignment. Table 1 contains the full list of regions excluded from the benchmark.
