Table 4 GEO accession numbers of sequencing data
From: Herpesviruses mimic zygotic genome activation to promote viral replication
Datasets (Generated in this study) | GEO accession number |
|---|---|
RNA-seq. of Pox virus infection | GSE234489 |
CUT&RUN of HSV-1 infection | GSE272015 |
RNA-seq. of DUX4-KO, CUT&Tag of HSV-1 infection | GSE234489 |
CHIP-seq of DUX4 and RNAseq upon HSV-1 infection | GSE174759 |
Datasets (Used for reanalysis) | Accession number |
ATAC-seq upon HSV-1 infection | GSE100611 |
CHIP-seq of histone marker upon HSV-1 infection | GSE124803 |
Pro-seq of HSV-1 infection | GSE106126 |
RNA-seq. of HSV1 infection | GSE59717 |
GSE129715 | |
GSE97009 | |
GSE101435 | |
RNA-seq. of FSHD | GSE153301 |
RNA-seq. of 8 cell stage | GSE36552 |
RNA-seq. of PAA treatment upon HSV-1 infection | GSM5608614 |
RNA-seq. of EBV infection | GSE155345 |
RNA-seq. of KSHV infection | GSE123898 |
GSE179742 | |
CHIP-seq of DUX4 (DUX4 induction) | GSM837613 |
ICP4 ChIP-seq | SRP131749 |
single-cell RNA-seq. of nasopharyngeal carcinoma | GSE162025 |
single-cell RNA-seq. of Head and neck squamous cell carcinoma | GSE164690 |
single-cell RNA-seq. of Merkel cell carcinoma tumor | GSE226438 |
RNA-seq. of Ad5 infection | PRJEB57806 |
