Fig. 5: Substantial cognate metalation predicted and confirmed in 4 mM manganese. | Nature Communications

Fig. 5: Substantial cognate metalation predicted and confirmed in 4 mM manganese.

From: A metal-trap tests and refines blueprints to engineer cellular protein metalation with different elements

Fig. 5

a Representative (n = 3 independent biological replicates) chromatogram showing in-cell acquired metals in MncA-containing fractions determined by ICP-MS, as in Fig. 4a, b but using a single anion exchange step (Q-Sepharose), HPLC SEC (TSK SW3000) and showing increased cognate metalation with MnII. MncA was identified by SDS-PAGE in Supplementary Fig. 10c. Metal contents of MncA-containing fractions (Supplementary Table 5) from independent biological replicates (Supplementary Fig. 10) were used to calculate fractional occupancies (%). b Metal availabilities (∆GM, squares, and text inset) in E. coli cytosol grown aerobically as in Fig. 4c, except MnII replaced with estimates from calibrated qPCR of MntR target mntS in cells cultured in 4 mM manganese (Supplementary Fig. 4). MncA metal-preferences as ∆GMP (pale blue circles, CuI, triangle). Bars are sensor ranges from 1% to 99%. Inset shows occupancies of MncA predicted from free energy gradients using Supplementary Data 4 and substituting MnII availability with a value of 4.5 × 10−5 M (as in inset text). The inset shows predicted MncA metalation (dark blue columns) with MnII, based on the largest favourable gradient (∆∆Gmax in main figure), plus partial metalation with FeII. Inset also shows mean ( ± SD) in-cell metalation from the n = 3 independent biological replicates (square, circle, triangle, pale blue columns, as in Supplementary Table 5), largely matching predictions. Source data are provided as a Source Data file.

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