Fig. 6: MncA read-outs of in-cell metalation in high NiII and CoII refine metal availabilities. | Nature Communications

Fig. 6: MncA read-outs of in-cell metalation in high NiII and CoII refine metal availabilities.

From: A metal-trap tests and refines blueprints to engineer cellular protein metalation with different elements

Fig. 6

a In-cell metalation with NiII and CoII, not CuI or ZnII, switches from FeII-MncA in metal-supplemented (600 µM, 300 µM, 600 µM, 800 µM respectively as shown) media, qualitatively matching predictions but quantitatively greater NiII and CoII metalation than predicted. Metalation (dark blue bars) predicted using Supplementary Data 4 from availabilities in un-supplemented medium but with separately altered high availabilities of CuI, ZnII, NiII or CoII (as inset text). High availabilities correspond to the respective upper metal boundaries (θDM or θD, 0.99 or 0.01) shown in Supplementary Fig. 4. Mean ( ± SD) measurements of in-cell metalation (n = 3 independent biological replicates, square, circle, triangle) in high metal (pale blue bars) calculated using data in Supplementary Tables 6–9 based on Supplementary Figs. 11–15. b Selected intracellular metal availabilities (∆GM) refined (triangles) using Supplementary Data 5 for NiII (left) from observed in-cell FeII- and NiII-MncA occupancies in high NiII (relative to FeII in un-supplemented medium), and for FeII (right) from CoII and FeII occupancies in CoII (relative to elevated CoII as show in inset text). Metal preferences of MncA shown as ∆GMP (circles). Bars are sensor ranges from 1% to 99%. c Calculated metalation (dark blue bars) using Supplementary Data 4 but with refined availabilities as in panel (b), reduced residuals for MnII (which was not included in the refinement process) relative to observed in-cell metalation (pale blue bars included for comparison), showing mean ( ± SD) (n = 3 independent biological replicates, square, circle, triangle). MncA metalation can be used to refine relative intracellular metal availabilities and Supplementary Data 5 is provided to enable such calculations. Source data are provided as a Source Data file.

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