Fig. 2: In silico chromosome ancestry painting of the Pisang Madu assembly and phylogenetic analysis.
From: Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors
In silico chromosome ancestry painting of the haplotype 1 a and haplotype 2 b assembly of Pisang Madu. Colour codes indicate the ancestors involved, as defined by Martin et al.8. ‘Unknown’ is for the remaining unknown ancestry and ‘NA’ corresponds to regions in which no origin could be attributed. Maximum likelihood phylogenetic analysis (GTR + Γ substitution model) of ADH c and GBSS d haplotypes. The trees were obtained with MEGAX; branch lengths are measured according to the number of substitutions per site, and the percentage of trees in which the associated taxa clustered together is shown alongside the branches. Sequences that are grouped in polytomy together with M. a. ssp. halabanensis are enframed in purple in c and d. Black arrows locate the ADH (chr06) and GBSS (chr09) on each Pisang Madu haplotypes assemblies. Source data are provided as a Source Data file.
