Table 1 Statistics of the genome assemblies and repeat content
From: Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors
Wild M. acuminata ssp. | M. schizocarpa | M. textilis | Musa cultivar | ||||
|---|---|---|---|---|---|---|---|
M. a. zebrina | M. a. banksii | M. a. burmannica | Pisang Madu H1 (M. a. halabanensis) | Pisang Madu H2 | |||
Basic chromosome number | 11 | 11 | 11 | 11 | 10 | 11 | 11 |
Number of sequences* | 14 | 14 | 14 | 14 | 13 | 14 | 14 |
N50 (Mb) scaffolds (L50) | 49.3 (6) | 45.1 (6) | 44.2 (6) | 46.3 (6) | 52.1 (5) | 45.0 (6) | 47.0 (6) |
N50 (Mb) contigs (L50) | 8.3 (21) | 1.5 (64) | 3.7 (36) | 20.7 (11) | 4.0 (35) | 18.1 (10) | 10.7 (18) |
Cumulative assembly size (Mb) | 550.9 | 484.8 | 505.1 | 534.2 | 545.6596533 | 529.6 | 544.6 |
anchored on chromosomes | 99.06% | 99.17% | 95.94% | 97.23% | 98.65% | 92.93% | 93.13% |
Number of Ns (%) (Mb) | 0.04 (0.01%) | 20.9 (4.30%) | 0.18 (0.04%) | 3.7 (0.70%) | 0.08 (0.02%) | 0.05 (0.01%) | 0.05 (0.01%) |
Number of genes | 34,451 | 35,669 | 35,669 | 35,075 | 33,662 | 35,986 | 36,439 |
Busco Complete (%) | 1592 (98.7%) | 1581 (98.0%) | 1592 (98.7%) | 1593 (98.7%) | 1547 (95.8%) | 1596 (98.9%) | 1594 (98.8%) |
Cumulative chromosome assembly size (Mb) | 535.9 | 468.6 | 477.4 | 509.8 | 531.1 | 475.4 | 490.3 |
%Repeat (includes tandem repeat, satellites, Low complexity and telomers) | 62.13% | 53.59% | 57.13% | 60.82% | 62.18% | 58.03% | 58.88% |
Retroelements (%) | 48.41% | 40.81% | 42.64% | 46.21% | 47.83% | 44.21% | 45.14% |
DNA transposons (%) | 12.03% | 11.31% | 12.81% | 13.09% | 13.10% | 12.33% | 12.18% |
BioProject | PRJEB72060 | PRJEB72058 | PRJEB72059 | PRJEB26661 | PRJEB72062 | PRJEB72061 | PRJEB72061 |
