Fig. 2: Newly generated complete genomes have superior assembly characteristics and cover phylogenetic diversity. | Nature Communications

Fig. 2: Newly generated complete genomes have superior assembly characteristics and cover phylogenetic diversity.

From: Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status

Fig. 2

a We collected both publicly available short-read-based genomes from isolates and metagenome-assembled genomes (MAG), as well as long-read genomes generated from isolates in this study using PacBio HiFi sequencing and compared them to the one reference genome from NCBI GenBank (accession number GCF_009831375.1). Assembly statistics of each group of genomes are compared to the reference genome, shown as dashed line. Thick lines indicate medians, boxes represent first and third quantile and whiskers indicate the rest of the data excluding outliers; outliers are shown as separate dots. Color legend is shared with (c). b Length and circularity of de novo assembled contigs from PacBio HiFi reads. c Maximum likelihood phylogenetic tree based on concatenated core genes. Each genome is annotated with its corresponding genome source and continent of origin. Stars mark genomes sequenced with PacBio newly added in this work. The gray shaded area marks the infant-associated clade that contains 8/10 MAGs with flagellum genes. Source data are provided as a Source Data file.

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