Fig. 3: Multi-omics analysis of gene expression changes in HIV-1 infected cells. | Nature Communications

Fig. 3: Multi-omics analysis of gene expression changes in HIV-1 infected cells.

From: Non-AUG HIV-1 uORF translation elicits specific T cell immune response and regulates viral transcript expression

Fig. 3

A Scatter plots of log2 fold changes in ribo-seq (x axis), RNA-seq (y axis) and protein (color coded) abundance at 12, 24 and 36 hours upon infection (n = 4 independent experiments). B Gene clustering analysis taking into account changes in RNA-seq, ribo-seq and protein abundance at all time points of infection. Mean trajectories (bold lines) and standard-deviation (light colored surfaces) are depicted (top panels) as well as gene ontology analysis (bottom panels) for each cluster.

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