Fig. 3: Somatic SNP and SV variants in clonal Pinot Noir.
From: Impacts of reproductive systems on grapevine genome and breeding
A A Venn diagram depicting the overlap of SNPs and SVs among the EU, ME, and PN groups. The number of SVs is indicated in parentheses. B Frequency of allelic variants in clonal Pinot Noir. The red segments represent the 70,291 SNPs specific to PN, as identified in the Venn diagram, while the gray segments indicate the 2,227,889 SNPs shared between PN and wild grapes. C The distribution of PN-specific SNPs and SVs among individuals. The bar chart displayed inside shows the average heterozygosity of germline variants (SNPs, n = 49,963, and SVs, n = 429) in PN grapes. Data are presented as mean ± SD. D GO term enrichment analysis of genes associated with PN-specific SVs. E A comparison of the genomes of PN and PN40024, focusing on the SVs present in PN but absent in wild grapes (EU and ME), located ~4.7 Mb on chromosome 10. The arrows on the genomes indicate the direction and location of genes belonging to the S-locus family in these regions.
