Fig. 8: Results of the mouse olfactory bulb data. | Nature Communications

Fig. 8: Results of the mouse olfactory bulb data.

From: STANCE: a unified statistical model to detect cell-type-specific spatially variable genes in spatial transcriptomics

Fig. 8

a The bar plot displays the numbers of ctSVGs for each cell type. b The heatmap displaying the intersections of ctSVGs between cell types. c The stacked bar plots display the variance explained by 12 cell type-specific spatial effects and random error, illustrating the top 20 ctSVGs for each of the 5 cell types with the highest matching with the layer annotation. Top left: deconvolved cell type 2. Top middle: deconvolved cell type 4. Top right: deconvolved cell type 8. Bottom left: deconvolved cell type 11. Bottom right: deconvolved cell type 12. d Spatial pattern plots of scaled gene expression for 5 example ctSVGs. Spots are outlined with colors indicating the layer annotation. Source data are provided as a Source Data file.

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