Table 1 Summary of the public datasets analysed in this study

From: Cryptic mitochondrial DNA mutations coincide with mid-late life and are pathophysiologically informative in single cells across tissues and species

Reference

Species

Tissues

Age range

No. of cells

Accession number

Protocol

Enge et al.30

Human

Pancreas

1 mo–54 yrs

2544

GSE81547

Smart-seq2

Muraro et al.31

Human

Pancreas

23–59 yrs

12,200

GSE85241

CEL-seq2

Voigt et al.32

Human

Retinal epithelium and choroid

54–92 yrs

8217

GSE135922

10x

Almanzar et al.33

Mouse

Pancreas, liver

3–24 mo

9380

AWS

Smart-seq2

Corces et al.34

Human

Brain tissue

38–95 yrs

4835

GSE147672

10x ATAC (single-nucleus)

Raredon et al.35

Human

Lung

76–88 yrs

3630

GSE133747

10x (single-cell)

Raredon et al.35

Mouse

Lung

9 wks

4221

GSE133747

10x (single-cell)

Raredon et al.35

Rat

Lung

9 wks

4429

GSE133747

10x (single-cell)

Raredon et al.35

Pig

Lung

3 mo

1746

GSE133747

10x (single-cell)

Buenrostro et al.43

Human

Cell lines

N/A

1344

GSE65360

scATAC-seq

Ma et al.65

Rat

Brown adipose tissue, liver

5–27 mo

29,165

GSE137869

10x (single-cell)

Smajić et al.69

Human

Midbrain

66–93 yrs

41,435

GSE157783

10x (single-nucleus)

Grubman et al.91

Human

Entorhinal cortex

67–91 yrs

13,214

GSE138852

10x (single-nucleus)

Camunas-Soler et al.92

Human

Pancreas

23–72 yrs

3789

GSE124742

Smart-seq2

    

∑ = 140,435

  
  1. Overall, we analyse sequencing data of more than 140,000 cells in four different species and seven different tissues, as well as cell line data.