Table 1 Comparison of assembly statistics of A. indica and M. azedarach genomes

From: Comparative genomics provides insights into the biogeographic and biochemical diversity of meliaceous species

Species

Sequencing platform

Assembly level

Genome size (Mb)

Repeat (%)

Gene Number

Base pair (QV)

Assigned (C)

BUSCO Comp.

Trans. map.

Reference

Melia azedarach

PacBio&ONT

T2T

222.45

32.14

28889

66.40

100%

99.60

93.56

Present work

PacBio

Chromosome

230.8

–

26712

–

–

92.98

–

8

Illumina & ONT

Chromosome

239.23

37.47

21983

–

99.14

96.05

–

5

Azadirachta indica

PacBio& ONT

T2T

233.21

32.10

28215

60.54

100%

99.50

92.83

Present work

Illumina & ONT

Chromosome

232.68

33.11

23087

–

96.13

99.07

–

5

PacBio

Chromosome

281.70

40.99

25767

–

96.93

91.7

–

82

Illumina

Contig

225

24.15

–

–

–

–

–

4

Illumina

Contig

267

32.5

32278

–

–

–

–

83

Illumina

Contig

261.10

–

–

–

–

–

–

83

  1. QV =  quality value, QV60 is no more than 1 base call error per 100,000 bp; C = percentage of the assembly assigned to chromosomes; Comp  = Completeness; Trans. map. = Transcripts mappability.
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