Fig. 3: Multidimensional scaling of QV distribution and autocorrelation.
From: Restoring flowcell type and basecaller configuration from FASTQ files of nanopore sequencing data
Similarity between QV distributions in subfigure a and b is measured by Bhattacharyya distance. Similarity between QV autocorrelations in subfigure c and d is measured by Euclidean distance. Flowcell type and basecaller version are represented by different colors and basecalling mode is represented by shape in multidimensional scaling (MDS). a MDS of QV distributions of Guppy. b MDS of QV distributions of Dorado. c MDS of QV autocorrelations of R9 Guppy6. d MDS of QV autocorrelations of R10 Dorado0.
