Table 1 Benchmarking results of de novo transcriptome assembly for plant RiPP precursor discovery
De novo assembler | Total time [min] | Total memory usage [GB] | Total detected cores (138 total cores) | Detected unique correct cores (65 total unique cores) | Detected repetitive cores (120 total repetitive cores) | Similarity [sum %] (total similarity score: 3600) | Identity [sum %] (total identity score: 3600) |
|---|---|---|---|---|---|---|---|
MEGAHIT (v1.2.9) | 1371 ± 66 | 210 ± 0 | 67 ± 0 | 38 ± 0 | 51 ± 0 | 2741 ± 0 | 2738 ± 0 |
SPAdes (v3.15.5) | 1627 ± 42 | 241 ± 3 | 93 ± 0 | 48 ± 0 | 74 ± 0 | 3012 ± 0 | 2981 ± 0 |
Trinity (v2.15.1) | 21833 ± 558 | 813 ± 23 | 64 ± 0 | 37 ± 0 | 44 ± 1 | 2618 ± 10 | 2597 ± 7 |
