Table 1 Summary of genome assembly and annotation
From: Exceptionally low genomic diversity in the underutilised legume Kersting’s groundnut
Category | Metric | Value |
|---|---|---|
Assembly | Accession | Tkg-36 |
Assembly size in bp | 365,532,019 | |
Number of scaffolds | 1312 | |
Scaffold N50 in bp | 30,590,648 | |
L50 | 6 | |
Longest scaffold in bp | 39,513,689 | |
GC content | 32.46% | |
No. of gaps | 231 | |
No. of N in bp (% of genome) | 115,500 (0.032%) | |
Complete BUSCOs | 98.3% (S: 94.5%, D: 3.8%) | |
Average LTR Assembly Index (LAI) | 17.2 | |
Gene prediction | No. of predicted genes | 33,193 |
No. of transcripts | 35,550 | |
No. of tRNA | 4866 | |
No. of lncRNA | 6714 | |
Complete BUSCOs | 92.8% (S: 76.8%, D: 16.0%) | |
Repeat elements | LTR in bp (% of genome) | 65,089,093 (17.81%) |
LINE in bp (% of genome) | 2,121,751 (0.58%) | |
SINE in bp (% of genome) | 2,944,038 (0.81%) | |
DNA transposons in bp (% of genome) | 7,460,237 (2.04%) | |
Rolling circle in bp (% of genome) | 2,342,530 (0.64%) | |
Others in bp (% of genome) | 33,231,225 (9.10%) | |
Unclassified repeat in bp (% of genome) | 72,150,883 (19.74%) | |
Total repeat in bp (% of genome) | 185,339,757 (50.70%) |
