Fig. 3: Pathogen reads in infected host and gene set enrichment analysis. | Nature Communications

Fig. 3: Pathogen reads in infected host and gene set enrichment analysis.

From: Iron regulatory pathways differentially expressed during Madurella mycetomatis grain development in Galleria mellonella

Fig. 3

A Heatmaps of the top 20 DEG cultured pathogen vs. pathogen reads in infected host 4 h. Full annotation of the genes in each of the heatmaps in (Supplementary Data3). B GSEA of the top 20 DEG (For testing differentially expressed genes, F-statistic, the associated P value, and the adj. P value were corrected using Benjamini–Hochberg multiple testing correction.) pathogen genes and enriched GO terms (gseGEO parameter pvalueCutoff = 0.05). For testing differentially expressed genes, F-statistic, the associated P value, adj. P value were corrected using Benjamini–Hochberg multiple testing correction (Statistics and reproducibility). Source data are available in the Gene Expression Omnibus (GEO) under accession number GSE213329.

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