Fig. 4: Bering applications across technologies and tissues.

a–h Bering was applied to various single-cell image-based spatial datasets, with predicted cell types and boundaries depicted in different colors and hulls in zoomed-in regions. Predicted background noises were colored in light gray. i Bering was applied to thick-tissue MERFISH mouse cortex dataset, resulting in the prediction of diverse cell types (left) and the successful segmentation of individual cells. A cross-section at 16 µm depth was magnified and presented on the right, highlighting the segmentation outcome for a specific plane.