Table 1 Overview of positive detections and samples tested from black flying foxes (BFF; P. alecto gouldi), grey-headed flying foxes (GHFF; P. poliocephalus) and pooled under-roost samples

From: Synchronized seasonal excretion of multiple coronaviruses coincides with high rates of coinfection in immature bats

Clade

Related viruses

BFF

GHFF

Under-roost pools

Total under-roost samples

2d.i

Novel clade

0/1108

(0.0%)

0/29 (0.0%)

3/510

(0.6%)

1392

2d.ii

Novel clade

20/1108

(1.8%)

0/29 (0.0%)

15/510

(2.9%)

1392

2d.iii

Novel clade

0/1108

(0.0%)

9/29 (31.0%)

4/510

(0.8%)

1392

2d.iv

CP07-like

34/1108

(3.1%)

0/29 (0.0%)

22/510

(4.3%)

1392

2d.v

PREDICT67-like

48/1108

(4.3%)

0/29 (0.0%)

40/510

(7.8%)

1392

2d.vi

HKU9-like

1/1108

(0.1%)

0/29 (0.0%)

2/510

(0.4%)

1392

  1. Related viruses: identifies whether detections formed a clade with existing known strains or represented novel clades with no known closely related viruses.