Fig. 3: Discordance between nuclear (left) and mitochondrial (right) phylogenies of strepsirrhine genera.
From: Multiple bursts of speciation in Madagascar’s endangered lemurs
Both phylogenies were estimated using IQTree with all available individuals, and then species-level branches were manually collapsed to visualize one branch per genus. Fully detailed phylogenies from these analyses are available in Supplementary Figs. 9 and 13. The nuclear and mitochondrial trees are discordant in three locations labeled with gray numbered circles. Gray arrows on the nuclear phylogeny indicate three locations, where gene flow was inferred using QuIBL, with the proportions of introgressed loci labeled. Full details from QuIBL are found in Supplementary Fig. 10. Families are colored to match Fig. 1.
