Fig. 1: IAV infection induces conserved transcriptional changes at day 10 and 40 post infection.

RNA sequencing was performed on sorted lung epithelial cells, fibroblasts, and blood endothelial cells (BEC) from naive and C57BL/6 mice infected with influenza A virus (IAV) 10 (A, B) or 40 (C, D) days previously. A, C Differentially expressed genes (DEG) with a twofold change and a False Discovery Rate q value < 0.05 in lung structural cells were considered statistically significant. 7–8 mice were combined to make four samples per timepoint. B, D Volcano plots show the relationship between the fold change and the associated p value with the top 10 DEG by fold change. E Venn diagrams showing overlap between differentially expressed upregulated genes at day 10 and 40 post IAV infection. Source data in E are provided as a Source Data file.