Fig. 2: Design and implementation of the cMSC. | Nature Communications

Fig. 2: Design and implementation of the cMSC.

From: Reprogramming the tumor microenvironment with c-MYC-based gene circuit platform to enhance specific cancer immunotherapy

Fig. 2

a Schematic showing synthetic PaMYC expressing GFP in MYClow and MYChigh cells. PaMYC exhibited low transcriptional activity in MYClow cells but high activity in MYChigh cells. b Schematic illustration of synthetic PrMYC expressing mCherry across c-MYC expression gradients. PrMYC exhibited high transcriptional activity in MYClow cells but low activity in MYChigh cells. c Mean fluorescence intensity (MFI) of GFP- and mCherry-driven expression of PaMYC and PrMYC in BFP+ cells, respectively, over a range of siRNA and tetracycline concentrations. The data are presented as the mean ± SD, n = 3 individual experiments. d Schematic showing the composition of the preliminary cMSC and its working mechanism in MYClow and MYChigh cells. The preliminary cMSC consisted of two parts. The first part was PaMYC, which expresses the GOI expression cassette whose 3’-UTR contains ten sequences of split-ribozyme-1 (split-1) in tandem. The second part consisted of PrMYC expressing split-ribozyme-2 (split-2). The working mechanisms of the preliminary cMSC in cells are as follows: In MYClow cells (left), low expression of c-MYC results in low activity of PaMYC and high activity of PrMYC. In step 1, PaMYC resulted in weak mRNA (GFP-10×split-1) transcription, whereas PrMYC exhibited strong transcription of split-2. In step 2, a large amount of split-2 would interact with GFP-split-1, leading to the degradation of GFP mRNA through the ribozyme-based mRNA degradation process, resulting in almost no expression of GFP (step 3). In MYChigh cells (right), high expression of c-MYC resulted in high activity of PaMYC and low activity of PrMYC. PaMYC resulted in strong mRNA (GFP-10×split-1) transcription, whereas PrMYC resulted in weak transcription of split-2. In step 2, a small amount of split-2 would partly interact with GFP-split-1, leading to only partial degradation of the GFP mRNA, which led to a small amount of GFP translation (step 3). e Schematic showing the composition of the optimized cMSC and its working mechanism in MYClow and MYChigh cells. The optimized cMSC consists of two parts. First, 6 binding sites of KLFa (6×KLFa-BS) were inserted upstream of PaMYC. The reengineered PaMYC (containing KLFa-BS) was used to drive the expression of a 5’ cassette encoding GFP, a T2A coding sequence, a cassette encoding KLFa and 3’ split-ribozyme-1 in tandem (GFP-T2A-KLFa-10×split-1). In the other part, PrMYC was used to express split-ribozyme-2 (split-2). The working mechanisms of the optimized cMSC in cells are as follows: In MYClow cells (left), low expression of c-MYC results in low activity of PaMYC and high activity of PrMYC. In step 1, PaMYC resulted in weak mRNA (GFP-T2A-KLFa-10×split-1) transcription, whereas PrMYC exhibited strong transcription of split-2. In step 2, a large amount of split-2 would interact with the mRNA of GFP-T2A-KLFa-10×split-1, leading to the degradation of GFP-T2A-KLFa-10×split-1 mRNA through the ribozyme-based mRNA degradation process, resulting in almost no expression of GFP (step 3). In MYChigh cells, high expression of c-MYC resulted in high activity of PaMYC and low activity of PrMYC. In step 1, a large amount of GFP-T2A-KLFa-10×split-1 is transcribed by PaMYC, whereas a small amount of split-2 is produced by PrMYC. In step 2, some GFP-T2A-KLFa-10×split-1 mRNAs interacted with split-2 and were degraded, whereas others were retained for the next step of translation. In step 3, small amounts of GFP and KLFa were translated. In step 4, the successfully translated KLFa is transferred to the nucleus, where it binds to the KLFa-BS upstream of PaMYC, reactivating it (step 5) to transcribe more GFP-T2A-KLFa-10×split-1 mRNA (step 6) and translation (step 7). This positive feedback loop would generate an increasing amount of GFP-T2A-KLFa-10×split-1 mRNAs so that the degradation effect of split-2 transcribed by PrMYC on GFP-T2A-KLFa-10×split-1 mRNA was negligible in this scenario. f Determining the mean fluorescence intensity (MFI) of GFP-driven expression by the preliminary cMSC and the optimized cMSC in BFP+ cells over a range of siRNA and tetracycline concentrations. The data were presented as the mean ± SD, n = 3 individual experiments.

Back to article page