Table 1 Factors affecting the accuracy and speed of SARST2
From: SARST2 high-throughput and resource-efficient protein structure alignment against massive databases
Disabled function | Average precision (%) | Difference in precision (%) | Running time with 32 processors (ms) | Difference in running time (ms) |
---|---|---|---|---|
None (all enabled) | 96.28 | 0.00 | 150.03 | 0.00 |
Synthesized DP | 94.37 | –1.91 | 206.69 | 56.66 |
WCN | 95.01 | –1.27 | 195.38 | 45.35 |
SMSSE | 93.37 | –2.91 | 182.59 | 32.56 |
SMAAT | 95.23 | –1.05 | 166.43 | 16.40 |
Variable gap penalty | 95.69 | –0.59 | 150.32 | 0.29 |
Diagonal word-matching | 95.35 | –0.93 | 469.70 | 319.67 |
Grouped searching | 96.02 | –0.26 | 324.68 | 174.65 |
Machine learning | 95.42 | –0.86 | 821.91 | 671.88 |