Fig. 1: Read mapping profiles from metagenomic sequencing of MPXV genomes from two samples with large deletions.
From: Patterns of genomic deletions in monkeypox virus during the 2022 outbreak in the United States
Reads mapped to reference sequence ON563414.3 show a gap or decrease in coverage over deletion regions (highlighted in orange with size of deletion in orange text) (a, c). b Even read coverage profiles produced when reads were mapped to final genomes containing deletions (b, d). Read depth is shown on the y axis; mean read depth across the genome is shown in bold text. Genomic position is shown above each graph; tick marks are approximately every 10,000 bases. Additional read mapping profiles for samples with low average read depth can be found in Fig. S2.
