Fig. 1: Distribution of genomic features in the Ae. tauschii genome.
From: The Aegilops tauschii genome reveals multiple impacts of transposons
Track a, the seven chromosomes. One scale label indicates 10 Mb. The black histogram indicates the distribution of two LTR-RTs (Quinta and Cereba); peaks indicate candidate centromere regions. Track b, miRNA. Track c, Gene density indicated by gene length/5 Mb. Track d, pseudogene density, indicated by gene length/5 Mb. Track e, recombination, measured by cM/Mb with 5 Mb bins. Track f, gene expression, calculated as the average reads per kilobase per million mapped reads (rpkm) in 5 Mb bins. Maximum rpkm from eight tissues and normalization of rpkm by log10(rpkm + 10-6). Track g, methylation, calculated by methylation base counts/C base counts in Mb bins. Only the most abundant CG methylation contexts are presented. Track h, total TE density across chromosomes, TE length/5 Mb. Track i, Gypsy. The distribution of Gypsy TE density across chromosomes: Gypsy length/5 Mb. Track j, Copia. The distribution of Copia density across chromosomes: Copia length/5 Mb. Track k, DNA TEs. The distribution of DNA transposon density across chromosomes: DNA transposon length/5 Mb.
