Fig. 4: TE distribution and methylation profiles across genes in the Ae. tauschii genome.
From: The Aegilops tauschii genome reveals multiple impacts of transposons
a, Distributions of retrotransposons, CACTAs and other DNA transposons across gene bodies and flanking regions (±3 kb). b, Distributions of Gypsy elements, CACTAs and Helitrons present in expressed genes, non-expressed genes and pseudogenes. c, Methylation levels of expressed genes, non-expressed genes and pseudogenes. d, Methylation levels of TEs and their surrounding regions. The analysis in d included only isolated TEs (no other TE or gene within 500 bp). The meta-profile of the methylation of the first intron of all genes without TEs represents the control in this plot. TSS, transcription start site; TTS, transcription terminal site.
