Extended Data Fig. 10: Relative genomic position of junctions.
From: Distinct mechanisms for genomic attachment of the 5′ and 3′ ends of Agrobacterium T-DNA in plants
Relative frequency of LB junctions after transformation with pWY82 (+ TRA, panels a-e) or pUBC (- TRA, panels f-j) along all chromosome arms, comparing wt (yellow) and mutants (other colours). Mutants were compared to wt of the same genetic background, with the exception of the hybrids (mre11 lig4 and mre11 tdp2), which were compared to the Col-0 wt. 0 % indicates centromeric position and 100 % telomeric; n indicates the number of mutant junctions. Wilcoxon rank-sum tests were performed to find the direction (one-sided tests) and significance level (two-sided tests) of the shifts (s) in relative position (plig4+TRA = 6 × 10−1, ptdp2+TRA = 4 × 10−1, pmre11+TRA = 4 × 10−1, pmre11lig4+TRA = 9 × 10−4, pmre11tdp2+TRA = 2 × 10−1, plig4-TRA = 3 × 10−3, ptdp2-TRA = 3 × 10−1, pmre11-TRA = 4 × 10−1, pmre11lig4-TRA = 7 × 10−1, pmre11tdp2-TRA = 2 × 10−3). ns: p ≥ 0.05, *: p < 0.05, **: p < 0.01, ***: p < 0.001. Only junctions that are represented by more than 20 different DNA molecules (thus representing events that are compatible with multiple cell divisions) were included in this analysis.
