Extended Data Fig. 3: High reproducibility among the three biological replicates of ChIP-seq experiments with CDF2::HA-CDF2 in cdf2-1 and cdf2-1 pif4-2 backgrounds. | Nature Plants

Extended Data Fig. 3: High reproducibility among the three biological replicates of ChIP-seq experiments with CDF2::HA-CDF2 in cdf2-1 and cdf2-1 pif4-2 backgrounds.

From: PIF4 enhances DNA binding of CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation

Extended Data Fig. 3

High reproducibility among the three biological replicates of ChIP-seq experiments with CDF2::HA-CDF2 in cdf2-1 and cdf2-1 pif4-2 backgrounds. a, Pearson correlation between the read coverage along the genome for input and chromatin-immunoprecipitated (IP) samples. b, CDF2-binding profile for the CONSTANS (CO) gene. The panels display two biological replicates for the ChIP-seq control in Col-0 and three biological replicates for ChIP-seq of CDF2 to the CO locus, visualized with the Integrated Genome Browser (IGB). c, CDF2- and PIF4-binding profiles to YUCCA8 and d to CIRCADIAN CLOCK ASSOCIATED1 (CCA1). Each set of panels displays two biological replicates for the ChIP-seq control in Col-0, three biological replicates for ChIP-seq of CDF2 in cdf2-1 and cdf2-1 pif4-2 backgrounds, and a single biological replicate for ChIP-seq of PIF421, visualized with the IGB.

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