Extended Data Fig. 10: Genomic clustering of LRR-RLKs, LRR-RLPs and NB-ARCs in Solanum tuberosum, Zea mays and Oryza sativa.
From: Concerted expansion and contraction of immune receptor gene repertoires in plant genomes
a, c, e. Table summarizing the statistical analysis of genomic clustering between PRRs (LRR-RLKs and LRR-RLPs) and NB-ARCs in Solanum tuberosum (a), Zea mays (c) and Oryza sativa (e). The 90-percentile distance (bp) between PRR gene family members and the next closest NB-ARC genes were calculated. This is then compared to a distribution (n = 1000) of 90-percentile distances between randomly-sampled genes and the next closest NB-ARC genes. One-sided test was performed to test the differences between tested distance (PRRs) and sampled distance (randomly-sampled). P-values are calculated based on the comparison to 1000 cases of randomly-sampled genes. Significant values are indicated in bold (p-value < 0.05 is considered as significant). b, d, f. Distribution (n = 1000) of 90-percentile distances (bp) between randomly-sampled genes and the next closest NB-ARC genes in Solanum tuberosum (b), Zea mays (d) and Oryza sativa (f). Red lines indicate the 90-percentile distance between the corresponding PRR gene family members and the next closest NB-ARC genes.
