Extended Data Fig. 6: Differentially methylated regions in ATREP2 transposable elements are predominantly hypomethylated and spread across the genome.
From: Long-lasting memory of jasmonic acid-dependent immunity requires DNA demethylation and ARGONAUTE1
a, Numbers and genomic contexts of differentially methylated regions (DMRs) overlapping with ATREP2 transposable elements (TEs). For details about DMR selection, see legend to Fig. 5c. Frequencies of hyper- and hypo-methylated DMRs are indicated by the bars above and below the x-axis, respectively. b, Distribution across the 5 Arabidopsis chromosomes of DMRs overlapping with ATREP2 TEs. Black dots and grey bars indicate centromeres and chromosomes, respectively. ATREP2 TEs labelled in green or grey overlapped with DMRs at all-C or CHH sequence contexts, respectively. Shown are all ATREP2 TEs which overlapped with at least one DMR from one 1JA_vs_3W comparison.
